species:   Artha
pid:       MI0005398
parent:    ath-MIR842
paralog:   
locus:     1:22577067-22577265
matures:   ['UCAUGGUCAGAUCCGUCAUCC', 'AUGAUGAAUCCGACCAUGAUG']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 1:22577067-22577265

0 out of bounds
2 alignments
2 proper strand
1 stranded perfect matches

                                                   ***********************                                                   ***********************                                                   
CAGUACCGUUCAGGGUGACAGAAACAUUUUCGAAAAGAGAGGCUAUAAGCGGGAUGAUGAAUCCGACCAUGAUGGUGUUGCAGAAAUUUAUGUAUGAUGUAGUUAUUGUCCAGGGAUCGAAACACCAUCAUGGUCAGAUCCGUCAUCCCACUUAUGUUUUCUUAGGUCAACAAAUAUGGACAAUUGAAAAGUGAAGCUC
...((((......))))......((.(((((((...((((((.((((((.(((((((((.(((.(((((((((((((((...((..(((.((.((((((....)))))).)).)))))..))))))))))))))).))).))))))))).)))))).))))))..(((..........)))..))))))))).......
-------------------------------------------------------------------------------------------------------------------------------UCAUGGUCAGAUCCGUCAUCC--------------------------------------------------- l=21 a=1 c
-----------------------------------------------------AUGAUGAAUCCGACCAUGAUG----------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c*
-------------------------------------------------------------------------------------------------------------------------------UCAUGGUCAGAUCCGUCAUCC--------------------------------------------------- l=21 a=1 ma
-----------------------------------------------------AUGAUGAAUCCGACCAUGAUG----------------------------------------------------------------------------------------------------------------------------- l=21 a=0 ma*

-------------------------------------------------------------------------------------------------------------------------------UCAUGGUCAGAUCCGUCAUCC--------------------------------------------------- l=21 a=1 (c,ma)
--------------------------------------------------------------------------------------------------------------------------------CAUGGUCAGAUCCGUCAUCa--------------------------------------------------- l=20 a=1 

mb-01011
ax-1011011
ku-01
ss-110111111100
fn-011
